Package: VSOLassoBag 1.0
VSOLassoBag: Variable Selection Oriented LASSO Bagging Algorithm
A wrapped LASSO approach by integrating an ensemble learning strategy to help select efficient, stable, and high confidential variables from omics-based data. Using a bagging strategy in combination of a parametric method or inflection point search method for cut-off threshold determination. This package can integrate and vote variables generated from multiple LASSO models to determine the optimal candidates. Luo H, Zhao Q, et al (2020) <doi:10.1126/scitranslmed.aax7533> for more details.
Authors:
VSOLassoBag_1.0.tar.gz
VSOLassoBag_1.0.zip(r-4.7)VSOLassoBag_1.0.zip(r-4.6)VSOLassoBag_1.0.zip(r-4.5)
VSOLassoBag_1.0.tgz(r-4.6-any)VSOLassoBag_1.0.tgz(r-4.5-any)
VSOLassoBag_1.0.tar.gz(r-4.7-any)VSOLassoBag_1.0.tar.gz(r-4.6-any)
VSOLassoBag_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
VSOLassoBag/json (API)
NEWS
| # Install 'VSOLassoBag' in R: |
| install.packages('VSOLassoBag', repos = c('https://chywang17.r-universe.dev', 'https://cloud.r-project.org')) |
- ExpressionData - Simulated Example Data for VSOLassoBag Application
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarestatisticalmethodfeatureextraction
Last updated from:d24af39925. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 279 | ||
| source / vignettes | OK | 368 | ||
| linux-release-x86_64 | OK | 248 | ||
| macos-release-arm64 | OK | 205 | ||
| macos-oldrel-arm64 | OK | 223 | ||
| windows-devel | OK | 189 | ||
| windows-release | OK | 188 | ||
| windows-oldrel | OK | 241 | ||
| wasm-release | OK | 130 |
Exports:kneedleLessPermutationsimpleEstimationVSOLassoBag
Dependencies:abindBiobaseBiocGenericsclicodetoolscpp11DelayedArrayfarverforeachgenericsGenomicRangesggplot2glmnetgluegtableIRangesisobanditeratorslabelinglatticelifecycleMatrixMatrixGenericsmatrixStatspbapplyPOTR6RColorBrewerRcppRcppEigenrlangS4ArraysS4VectorsS7scalesSeqinfoshapeSparseArraySummarizedExperimentsurvivalvctrsviridisLitewithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Simulated Example Data for VSOLassoBag Application | ExpressionData |
| Kneedle Algorithm: to detect elbow point(s) on the curve | kneedle |
| Reduce permutation times by fitting generalized pareto distribution of the right tail data | LessPermutation |
| Parametric Statistical Test | simpleEstimation |
| One-step main function of VSOLassoBag framework | VSOLassoBag |
