Package: VSOLassoBag 0.99.1
VSOLassoBag: Variable Selection Oriented LASSO Bagging Algorithm
A wrapped LASSO approach by integrating an ensemble learning strategy to help select efficient, stable, and high confidential variables from omics-based data. Using a bagging strategy in combination of a parametric method or inflection point search method for cut-off threshold determination. This package can integrate and vote variables generated from multiple LASSO models to determine the optimal candidates. Luo H, Zhao Q, et al (2020) <doi:10.1126/scitranslmed.aax7533> for more details.
Authors:
VSOLassoBag_0.99.1.tar.gz
VSOLassoBag_0.99.1.zip(r-4.5)VSOLassoBag_0.99.1.zip(r-4.4)VSOLassoBag_0.99.1.zip(r-4.3)
VSOLassoBag_0.99.1.tgz(r-4.4-any)VSOLassoBag_0.99.1.tgz(r-4.3-any)
VSOLassoBag_0.99.1.tar.gz(r-4.5-noble)VSOLassoBag_0.99.1.tar.gz(r-4.4-noble)
VSOLassoBag_0.99.1.tgz(r-4.4-emscripten)VSOLassoBag_0.99.1.tgz(r-4.3-emscripten)
VSOLassoBag.pdf |VSOLassoBag.html✨
VSOLassoBag/json (API)
NEWS
# Install 'VSOLassoBag' in R: |
install.packages('VSOLassoBag', repos = c('https://chywang17.r-universe.dev', 'https://cloud.r-project.org')) |
- ExpressionData - Simulated Example Data for VSOLassoBag Application
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarestatisticalmethodfeatureextraction
Last updated 2 years agofrom:c87efe23dd. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-win | NOTE | Nov 21 2024 |
R-4.5-linux | NOTE | Nov 21 2024 |
R-4.4-win | OK | Nov 21 2024 |
R-4.4-mac | OK | Nov 21 2024 |
R-4.3-win | OK | Nov 21 2024 |
R-4.3-mac | OK | Nov 21 2024 |
Exports:kneedleLessPermutationsimpleEstimationVSOLassoBag
Dependencies:abindaskpassBiobaseBiocGenericsclicodetoolscolorspacecrayoncurlDelayedArrayfansifarverforeachgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glmnetgluegtablehttrIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpbapplypillarpkgconfigPOTR6RColorBrewerRcppRcppEigenrlangS4ArraysS4VectorsscalesshapeSparseArraySummarizedExperimentsurvivalsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Simulated Example Data for VSOLassoBag Application | ExpressionData |
Kneedle Algorithm: to detect elbow point(s) on the curve | kneedle |
Reduce permutation times | LessPermutation |
Parametric Statistical Test | simpleEstimation |
One-step main function of VSOLassoBag framework | VSOLassoBag |